Gene

zgc:173544

ID

ZDB-GENE-030131-6229

Name

zgc:173544

Symbol

zgc:173544 Nomenclature History

Previous Names

fi39f12
wu:fi39f12 (1)

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to localize to integral component of membrane.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa7290	Allele with one point mutation	Unknown	Premature Stop	ENU
sa21872	Allele with one point mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)

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Sequence Targeting Reagents

No data available

Human Disease

Associated With zgc:173544 Human Ortholog

No data available

Associated With zgc:173544 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

No data available

Domain Details Per Protein

Protein	Length
UniProtKB:F1QMW9 InterPro	702
UniProtKB:A0A2R8Q8I5 InterPro	723

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Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 11

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:173544-201 (1) Ensembl	Ensembl	2,271 nt	Select Tool ZFIN BLAST
mRNA	zgc:173544-204 (1) Ensembl	Ensembl	813 nt	Select Tool ZFIN BLAST
mRNA	zgc:173544-205 (1) Ensembl	Ensembl	6,818 nt	Select Tool ZFIN BLAST
ncRNA	zgc:173544-003 (1) Ensembl	Ensembl	350 nt	Select Tool ZFIN BLAST
ncRNA	zgc:173544-004 (1) Ensembl	Ensembl	451 nt	Select Tool ZFIN BLAST

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Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	DKEY-205K8	CR848761	ZFIN Curated Data
Contains	SNP	rs3728363		ZFIN Curated Data
Contains	SNP	rs3728364		ZFIN Curated Data
Contains	SNP	rs3728365		ZFIN Curated Data
Contains	SNP	rs3728366		ZFIN Curated Data
Encodes	EST	fi39f12	AW171214 AW174142
Encodes	EST	fl53c04	BI705586
Encodes	cDNA	MGC:173544	BC154744	ZFIN Curated Data

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Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001113630 (1)	2275 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:CU207258 (1)	217918 nt	Select Tool MegaBLAST
Polypeptide	UniProtKB:A0A2R8Q8I5 (1)	723 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

No data available

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

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